You had better run the following analyses one by one from top to bottom. But you may do "Randomize the network structure" at last, as it can be time consuming.
| Network reports | |
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Global Network properties |
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Individual nodes' centrality |
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Module Separation and modularity calculation |
| Network visualization | |
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Simple network plot (un-editable) |
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Output for the Cytoscape software visualization |
| Network statistics | |
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Fit three power-law models (regular power law, exponential law and truncated power law) |
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Randomize the network structure and then calculate network properties (Updated: Modularity values from random networks have been added.) |
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Calculate Gene/OTU significances (GS) with environmental traits and then use Mantel test to check the correlations between GS and network connectivity |
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Module-EigenGene analyses |