Publications

  1. Zhu C, Wu L, Ning D, Tian R, Gao S, Zhang B, Zhao J, Zhang Y, Xiao N, Wang Y, Brown MR, Tu Q, Acevedo D, Agullo-Barcelo M, de Araujo JC, de Abreu Mac Conell ÉF, Boehnke K, Bond P, Bott CB, Bovio-Winkler P, Brewster RK, Bux F, Cabezas A, Cabrol L, Chen S, Etchebehere C, Ford A, Gómez JS, Griffin JS, Gu AZ, Habagil M, Hale L, Harmon M, Horn H, Hu Z, Johnson DR, Marcantini DG, Keucken A, Kumari S, Leal CD, Lee ZMP, Li Y, Li Z, Li M, Liu Y, Mendonça-Hagler LC, de Menezes FGR, Meyers AJ, Palmer A, Parameswaran P, Reginatto V, de los Reyes FL, Rossetti S, Sidhu J, Smith K, de Sousa OV, Stephens K, Sun C, Tooker NB, Van Nostrand JD, Wakelin S, Wang B, Weaver JE, West S, Woo S-G, Wu J-H, Wu L, Xi C, Yan T, Yang M, Young M, Zhang C, Zhang Q, Zhang W, Zheng W, Zhou H, Zhuang W, Ju F, Wells GF, Guo J, He Z, Nielsen PH, Wang A, Zhang Y, Chen T, He Q, Criddle CS, Wagner M, Tiedje JM, Curtis TP, Wen X, Yang Y, Alvarez-Cohen L, Stahl DA, Alvarez PJJ, Rittmann BE, Zhou J & Global Water Microbiome C. Global diversity and distribution of antibiotic resistance genes in human wastewater treatment systems. Nature Communications 16, 4006 (2025). https://doi.org/10.1038/s41467-025-59019-3

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  2. Wang Y-C, Wang S, Lv Y-H and Wang C. QSCNAS: A platform for quorum sensing and quenching bacteria analysis in global wastewater treatment plants. iMeta 4, e70026 (2025) doi:10.1002/imt2.70026.

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  3. Wang Y-C, Wang S, Lv Y-H, Wang J-Y, Yang W-X, Deng Y, Ju F and Wang C. Diversity, influential factor, and communication network construction of quorum sensing bacteria in global wastewater treatment plants. Water Research 279, 123437 (2025) doi:10.1016/j.watres.2025.123437.

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  4. Nicolas-Asselineau L, Speth DR, Zeller LM, Woodcroft BJ, Singleton CM, Liu L, Dueholm MKD and Milucka J. Occurrence and temporal dynamics of denitrifying protist endosymbionts in the wastewater microbiome. ISME Communications, ycaf209 (2025) doi:10.1093/ismeco/ycaf209.

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  5. Liu R, Chen Y, Li S-Y, Chen Y-P, Guo J-S, Liu S-Y and Yan P. Filamentous bacteria in activated sludge: Geographic distribution and impact of treatment processes. Journal of Environmental Management 379, 124859 (2025) doi:10.1016/j.jenvman.2025.124859.

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  6. Xu G, Zhao S, Rogers MJ, Chen C and He J. Global prevalence of organohalide-respiring bacteria dechlorinating polychlorinated biphenyls in sewage sludge. Microbiome 12, 54 (2024) doi:10.1186/s40168-024-01754-8.

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  7. Wang Y-C, Lv Y-H, Wang S, Wang J-Y, Yang W-X, Ju F and Wang C. The role of bacterial communication in activated sludge at low temperatures. Cell Reports Physical Science 5, 102169 (2024) doi:10.1016/j.xcrp.2024.102169.

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  8. Liu X, Nie Y and Wu X-L. Predicting microbial community compositions in wastewater treatment plants using artificial neural networks. Microbiome 11, 93 (2023) doi:10.1186/s40168-023-01519-9.

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  9. Zhang L, Huang X, Zhou J and Ju F. Active predation, phylogenetic diversity, and global prevalence of myxobacteria in wastewater treatment plants. ISME Journal 17, 671–681 (2023) doi:10.1038/s41396-023-01378-0.

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  10. Dueholm MKD, Nierychlo M, Andersen KS, Rudkjøbing V, Knutsson S, MiDAS Global Consortium, Albertsen M and Nielsen PH. MiDAS 4: A global catalogue of full-length 16S rRNA gene sequences and taxonomy for studies of bacterial communities in wastewater treatment plants. Nature Communications 13, 1908 (2022) doi:10.1038/s41467-022-29438-7.

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  11. Zhang B, Ning D, Van Nostrand JD, Sun C, Yang Y, Zhou J and Wen X. The call for regional design code from the regional discrepancy of microbial communities in activated sludge. Environmental Pollution 273, 116487 (2021) doi:10.1016/j.envpol.2021.116487.

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  12. Sun C, Zhang B, Ning D, Zhang Y, Dai T, Wu L, Li T, Liu W, Zhou J and Wen X. Seasonal dynamics of the microbial community in two full-scale wastewater treatment plants: diversity, composition, phylogenetic group based assembly and co-occurrence pattern. Water Research 200, 117295 (2021) doi:10.1016/j.watres.2021.117295.

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  13. Zhang B, Ning D, Van Nostrand JD, Sun C, Yang Y, Zhou J and Wen X. Biogeography and assembly of microbial communities in wastewater treatment plants in China. Environmental Science & Technology 54, 5884–5892 (2020) doi:10.1021/acs.est.9b07950.

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  14. Zhang B, Ning D, Yang Y, Van Nostrand JD, Zhou J and Wen X. Biodegradability of wastewater determines microbial assembly mechanisms in full-scale wastewater treatment plants. Water Research 169, 115276 (2020) doi:10.1016/j.watres.2019.115276.

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  15. Wu L, Ning D, Zhang B, Li Y, Zhang P, Shan X, Zhang Q, Brown MR, Li Z, Van Nostrand JD, Ling F, Xiao N, Zhang Y, Vierheilig J, Wells GF, Yang Y, Deng Y, Tu Q, Wang A, Acevedo D, Agullo-Barcelo M, Andersen GL, de Araujo JC, Boehnke KF, Bond P, Bott CB, Bovio P, Brewster RK, Bux F, Cabezas A, Cabrol L, Chen S, Etchebehere C, Ford A, Frigon D, Griffin JS, Gu AZ, Habagil M, Hale L, Hardeman SD, Harmon M, Horn H, Hu Z, Jauffur S, Johnson DR, Keucken A, Kumari S, Leal CD, Lebrun LA, Lee J, Lee M, Lee ZMP, Li M, Li X, Liu Y, Luthy RG, Mendonça-Hagler LC, de Menezes FGR, Meyers AJ, Mohebbi A, Noyola A, Oehmen A, Palmer A, Parameswaran P, Park J, Patsch D, Reginatto V, de los Reyes FL, Rossetti S, Sanabria J, Sidhu J, Sloan WT, Smith K, de Sousa OV, Stephens K, Tian R, Tooker NB, De los Cobos Vasconcelos D, Wakelin S, Wang B, Weaver JE, West S, Wilmes P, Woo S-G, Wu J-H, Wu L, Xi C, Xu M, Yan T, Yang M, Young M, Yue H, Zhang Q, Zhang W, Zhang Y, Zhou H, Zhang T, He Z, Keller J, Nielsen PH, Alvarez PJJ, Criddle CS, Wagner M, Tiedje JM, He Q, Curtis TP, Stahl DA, Alvarez-Cohen L, Rittmann BE, Wen X and Zhou J. Global diversity and biogeography of bacterial communities in wastewater treatment plants. Nature Microbiology 4, 1183–1195 (2019) doi:10.1038/s41564-019-0426-5.

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